Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs80159617 chr21:48082242 G/A 5.16E-9 511 21.52 21.02 2.73 KM Plot
HNSC rs80217625 chr15:93844097 G/A 3.94E-5 507 22.5 19.07 7.17 KM Plot
HNSC rs8036676 chr15:31153358 T/C 9.69E-6 507 12.07 20.53 22.78 KM Plot
HNSC rs811304 chr15:31135789 C/T 1.34E-5 515 22.83 20.02 12.07 KM Plot
HNSC rs824399 chr16:83989994 A/G 3.62E-8 515 2.87 23.1 21.37 KM Plot
HNSC rs9308819 chr2:100016849 G/A 3.04E-8 515 22.5 20.15 7 KM Plot
HNSC rs9308821 chr2:100073512 G/C 3.33E-6 513 22.42 19.72 7.17 KM Plot
HNSC rs9308822 chr2:100085804 T/C 1.63E-6 507 21.93 20.77 7.17 KM Plot
HNSC rs9308823 chr2:100087468 T/C 4.37E-5 514 22.27 20.48 9.6 KM Plot
HNSC rs9506380 chr13:20374233 C/A 4.43E-5 514 26.3 16.23 22.82 KM Plot
HNSC rs9506383 chr13:20384447 C/G 4.43E-5 514 26.3 16.23 22.82 KM Plot
HNSC rs9515198 chr13:111029065 C/T 4.42E-5 492 20.78 23.03 18.25 KM Plot
HNSC rs9627359 chr22:46664431 C/G 4.28E-6 510 21.65 23.67 11.7 KM Plot
HNSC rs9627360 chr22:46664638 G/A 4.64E-6 512 21.65 23.67 11.7 KM Plot
HNSC rs9627363 chr22:46666161 T/C 2.28E-5 514 21.78 23.1 11.7 KM Plot